PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1018s0090.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 179aa    MW: 20538.8 Da    PI: 9.4906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1018s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-3399157159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK vk+s+fprsYYrCts+gC vkk+v+r+++d+++v++tYeg+H+h+
  SapurV1A.1018s0090.1.p  99 LDDGYRWRKYGQKIVKNSKFPRSYYRCTSNGCGVKKQVQRNSKDEEIVVTTYEGKHTHP 157
                             59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-3484157IPR003657WRKY domain
SuperFamilySSF1182902.48E-2991158IPR003657WRKY domain
PROSITE profilePS5081131.44594159IPR003657WRKY domain
SMARTSM007744.6E-3899158IPR003657WRKY domain
PfamPF031068.4E-28100157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MLMEKYQIFL PVSDQSSPSG SPSSLNMANP FIYFHGENEN GVRPGSRTRN VDAKHSDPQT  60
SRVSNNSEIK AEPGMRGGEN SEFRKHKYAF QTRSQVDILD DGYRWRKYGQ KIVKNSKFPR  120
SYYRCTSNGC GVKKQVQRNS KDEEIVVTTY EGKHTHPTER CTENIEDILR QMQTYTPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3089156774Probable WRKY transcription factor 4
2lex_A8e-3089156774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089431e-129AC208943.1 Populus trichocarpa clone JGIACSB1089-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318747.11e-106hypothetical protein POPTR_0012s10290g
SwissprotQ9FYA22e-48WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLB9I3U61e-106B9I3U6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s10290.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-49WRKY DNA-binding protein 75